黎斌 博士

生物信息学中心主任

教育经历 Education

2003～2010 中国科学院大连化学物理研究所，理学博士

Ph.D., Dalian Institute of Chemical Physics, Chinese Academy of Sciences

1999～2003 中国科学技术大学，理学学士

Bachelor of science, University of science and technology of China

工作经历 Professional Experience

2021-至今 北京生命科学研究所 生物信息学中心主任

Director of Bioinformatics Center, National Institute of Biological Science, Beijing

2016～2021 中国科学技术大学，生命科学与医学部 副研究员

Associate researcher, Department of life sciences and medicine, University of science and technology of China

2014～2016 美国哥伦比亚大学 博士后研究员

Postdoctoral researcher, Department of chemistry, Columbia University

2010～2014 美国加州大学伯克利分校 博士后

Post-doctoral, Department of chemistry, University of California, Berkeley

发表文章 Publications

1. Bin Li^#, Wen Zhang^#, Chuang Guo^#, Hao Xu, Longfei Li, Minghao Fang, Yinlei Hu, Xinye Zhang, Xinfeng Yao, Meifang Tang, Ke Liu, Xuetong Zhao, Jun Lin, Linzhao Cheng, Falai Chen, Tian Xue & Kun Qu, “Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution”, Nature Methods, 2022, 19, 662–670.

2. Bin Li^#, Young Li^#, Kun Li, Lianbang Zhu, Qiaoni Yu, Jingwen Fang, Pengfei Cai, Chen Jiang, Kun Qu, “APEC: An accesson-based method for single-cell chromatin accessibility analysis”, Genome Biology, 2020, 21, 116.

3. Chuang Guo^#, Bin Li^#, Huan Ma, Xiaofang Wang, Lianxin Liu, Xiaoling Ma, Jianping Weng, Haiming Wei, Tengchuan Jin*, Jun Lin*, Kun Qu*, “Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm”, Nature Communications, 2020, 11, 3924.

4. Yinlei Hu^#, Bin Li^#, Wen Zhang, Nianping Liu, Pengfei Cai, Falai Chen* and Kun Qu*, “WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition”, Briefings in Bioinformatics, 2021, https://doi.org/10.1093/bib/bbab085

5. Zuqi Zuo, Yonghao Jin, Wen Zhang, Yichen Lu, Bin Li*, Kun Qu*, “ATAC-pipe: general analysis of genome-wide chromatin accessibility”, Briefings in Bioinformatics, 2019, 20, 1934–1943.